There is some adjustment, I guess, but I don't really know what it is, because it's subtle. The main points I would make with soft stones are: make really sure that they are flat. You don't say which Shaptons you have, and I don't have the Pros, but the Glass stones dish very, very slowly, and your soft JNat will dish more quickly. Something to keep an eye on. The other point is: be careful about digging into the stone. Hard stones have a way of telling you your angle is too high. Soft stones may tell you this when you dig a furrow and realize you've messed up part of your edge (just a little, though).
The good news is that soft stones are easier than hard ones, so there's really not too much to worry about. And some final edge-leading passes for stropping are a perfectly good thing to do on them.